sORFfinder is a web-based tool to identify small open reading frames (sORF) with high coding potential. However, web-application has some limitations. You can conduct more sophisticated analysis in your local compute downloading the perl scripts. The limitation of web-application is written in the methods
. Web-based program has two applications. First, you can identify sORFs which have similar nucleotide composition of coding genes by hiden markov model (Search_sORF). Then, the functionality of sORFs can be examined by comparative genomics (Examine_SP). Please see Application Note
of this program package published in Bioinformatics.